Our contribution to the community | Zan Lab -- Computational Biology for Plant Breeding and Ecological Adaptation
Wet-lab Protocal
- Zan Y et al. A high throughput, cost-efficient library preparation protocol for large-scale next generation sequencing. protocols.io. 2018. DOI = dx.doi.org/10.17504/protocols.io.rt8d6rw.
Software packages and pipline
- BEFDR: A R package for multi-locus association analysis using a backward elimination
approach. Available in Github
- A Python Snakemake pipeline for low coverage genotype imputation (R/Python/Perl). Available in
Github
- TD: A R package for downstream pipeline for handling low coverage imputation.
Available in Github
Teaching materials
Conferernece talks in quantattive genetics
- Epistasis, genotype by environment intearction and across envrionment complex trait varaition Link to video
- 60-year artificial bi-directional selection and efforts from 3 generation of distinguished scientist Link to video